Performance Prediction and Modeling

• SIGMA: A Simulator Infrastructure to Guide Memory Analysis pdf-308k
  
• Compact Application Signatures for Parallel and Distributed Scientific Codes pdf-348k
  
• Scalable Analysis Techniques for Microprocessor Performance Counter Metrics pdf-1016k

New Applications

• High Performance Computing Meets Experimental Mathematics pdf-144k
• A High-Level Approach to Synthesis of High-Performance Codes for Quantum Chemistry pdf-108k
• MPI and OpenMP Paradigms on Cluster of SMP Architectures pdf-108k

Network Protocol Tuning

• The Effects of Systemic Packet Loss on Aggregate TCP Flows pdf-344k
• Implementation and Evaluation of A QoS-Capable Cluster-Based IP Router pdf-180k
• A TCP Tuning Daemon pdf-128k

Innovative Middleware

• Distributed Dynamic Hash Tables Using IBM LAPI pdf-744k
• Multivariate Resource Performance Forecasting in the Network Weather Service pdf-328k
• Disk Cache Replacement Algorithm for Storage Resource Managers in Data Grids pdf-140k

Non-uniform Communication Networks

• Efficient Synchronization for Nonuniform Communication Architectures pdf-124k
• Ultra-High Performance Communication with MPI and the Sun Fire(TM) Link Interconnect pdf-92k
• Separated High-bandwidth and Low-latency Communication in the Cluster Interconnect Clint pdf-204k

Application Performance Evaluation

• An Empirical Performance Evaluation of Scalable Scientific Applications pdf-1012k
• UPC Performance and Potential: A NPB Experimental Study pdf-192k
• Scaling the Unscalable: A Case Study on the AlphaServer SC pdf-196k

Visualization

• Advanced Visualization Technology for Terascale Particle Accelerator Simulations pdf-9.8MB
• SmartPointers: Personalized Scientific Data Portals In Your Hand pdf-244k
• A Framework for Performance Modeling and Prediction pdf-536k

Scheduling and Routing

• Improving Route Lookup Performance Using Network Processor Cache pdf-252k
• Pipelined Scheduling of Tiled Nested Loops onto Clusters of SMPs using Memory Mapped Network Interfaces pdf-832k
• Data Reservoir: Utilization of Multi-Gigabit Backbone Network for Data-Intensive Research pdf-264k

Sparse Linear Algebra

• A New Scheduling Algorithm For Parallel Sparse LU Factorization with Static Pivoting pdf-436k
• Performance Optimizations and Bounds for Sparse Matrix-Vector Multiply pdf-836k
• A New Data-Mapping Scheme For Latency-Tolerant Distributed Sparse Triangular Solution pdf-304k

Message Passing

• Implementing the MPI Process Topology Mechanism pdf-252k
• MPICH-V: Toward a Scalable Fault Tolerant MPI for Volatile Nodes pdf-164k
• The Proteus Multiprotocol Message Library pdf-118k

Compilers and Run Time Systems

• On Increasing Architecture Awareness in Program Optimizations to Bridge the Gap between Peak and Sustained Processor Performance -- Matrix-Multiply Revisited pdf-236k
• Better Tiling and Array Contraction for Compiling Scientific Programs pdf-468k
• Asserting Performance Expectations pdf-328k

Gordon Bell I

• A 29.5 Tflops simulation of planetesimals in Uranus-Neptune region on GRAPE-6 pdf-3.6MB
• Salinas: A Scalable Software for High-Performance Structural and Solid Mechanics Simulations pdf-1.5MB
• NAMD: Biomolecular Simulation on Thousands of Processors pdf-500k

Web Services

• ICENI: An Open Grid Service Architecture Implemented with Jini pdf-40k
• The Web Service Discovery Architecture pdf-232k
• Interoperable Web Services for Computational Portals pdf-252k

Computational Applications

• Accelerating Parallel Maximum Likelihood-based Phylogenetic Tree Calculations using Subtree Equality Vectors pdf-312k
• Parallel Multiscale Gauss-Newton-Krylov Methods for Inverse Wave Propagation pdf-648k
• A Scalable Parallel Fast Multipole Method for Analysis of Scattering from Perfect Electrically Conducting Surfaces pdf-148k
• Dual-Level Parallelism for Deterministic and Stochastic CFD Problems pdf-540k

Run Time Systems

• Active Harmony: Towards Automated Performance Tuning pdf-628k
• Library Support for Hierarchical Multi-Processor Tasks pdf-112k
• STORM: Lightning-Fast Resource Management pdf-320k

System Components

• Massive Arrays of Idle Disks For Storage Archives pdf-708k
• Gilgamesh: A Multithreaded Processor-In-Memory Architecture for Petaflops Computing pdf-272k
• Owner Prediction for Accelerating Cache-to-Cache Transfer Misses in a cc-NUMA Architecture pdf-96k

Gordon Bell Earth Simulator

• 16.4 Tflops Direct Numerical Simulation of Turbulence by Fourier Spectral Method on the Earth Simulator pdf-3.5MB
• 14.9 TFLOPS Three-dimensional Fluid Simulation for Fusion Science with HPF on the Earth Simulator pdf-492k
• A 26.58 Tflops Global Atmospheric Simulation with the Spectral Transform Method on the Earth Simulator pdf-764k

Grid Scheduling

• SMP System Interconnect Instrumentation for Performance Analysis pdf-368k
• Executing Multiple Pipelined Data Analysis Operations in the Grid pdf-128k
• A Decoupled Scheduling Approach for the GrADS Program Development Environment pdf-116k

Data and Queries

• Applying Chimera Virtual Data Concepts to Cluster Finding in the Sloan Sky Survey pdf-664k
• Active Proxy-G: Optimizing the Query Execution Process in the Grid pdf-208k
• Giggle: A Framework for Constructing Scalable Replica Location Services pdf-248k

Hardware Architecture

• Early Evaluation of the IBM p690 pdf-240k
• An Overview of the BlueGene/L Supercomputer pdf-320k
• High-Density Computing: A 240-Processor Beowulf in One Cubic Meter pdf-3.1MB

Grid Applications

• Utilization of Departmental Computing GRID System for Development of an Artificial Intelligent Tapping Inspection Method, Tapping Sound Analysis pdf-300k
• Collaborative Simulation Grid: Multiscale Quantum-Mechanical/Classical Atomistic Simulations on Distributed PC Clusters in the US and Japan pdf-272k
• QMView and GAMESS: Integration into the World Wide Computational Grid pdf-604k

Data Archives

• Scalable Directory Services Using Proactivity pdf-128k
• Monitoring Data Archives for Grid Environments pdf-84k
• Merging Multiple Data Streams on Common Keys Over High Performance Networks pdf-148k